 |
Publications
Papers (international peer-reviewed)
1. Badawi, N., S. Rønhede, S. Olsson, B. B. Kragelund, A. H. Johnsen, O. S. Jacobsen and J. Aamand (2009). Metabolites of the phenylurea herbicides chlorotoluron, diuron, isoproturon and linuron produced by the soil fungus Mortierella sp. Environ. Poll.157: 114-116.
2. Gülez, G., A. Dechesne, and B.F. Smets. (2010). The Pressurized Porous Surface Model: An improved tool to study bacterial behavior under a wide range of environmentally relevant matric potentials. Journal of Microbiological Methods 82: 324-326.
3. Owsianiak, M., A. Dechesne, P.J. Binning, J.C. Chambon, S.R. Sorensen, and B.F. Smets (2010). Evaluation of bioaugmentation with entrapped degrading cells as a soil remediation technology. Environmental Science and Technology 44: 7622-7627.
4. Simonsen, A., Badawi, N., Anskjær, G.G., Albers, C.N., Sørensen, S.R., Sørensen, J., Aamand, J. (2012) Intermediate accumulation of metabolites results in a bottleneck for mineralization of the herbicide metabolite 2,6-dichlorobenzamide (BAM) by Aminobacter spp., Appl. Microbiol. Biotechnol. 94: 237-245. DOI: 10.1007/s00253-011-3591
5. Gülez, G., A. Dechesne, C. T. Workman, and B. F. Smets. 2012. Transcriptome dynamics of Pseudomonas putida KT2440 under water stress. Appl. Environ. Microbiol. 78: 676-683.
6. Bers, K., Leroy, B., Breugelmans, P., Albers, P., Lavigne, R., Sørensen, S.R., Aamand, J., Mot, R.D., Wattiez, R., and Springael, D.. 2011. A novel linuron hydrolase identified by genomic-proteomic analysis of phenylurea herbicide mineralization by Variovorax sp. strain SRS16. Appl. Environ. Microbiol. 77: 8754-8764.
7. Dechesne, A., & Smets, B. F. (2012). Pseudomonad swarming motility is restricted to a narrow range of high matric water potentials. Applied and environmental microbiology, 78(8): 2936–40.
8. Gülez, G., Dechesne, A., Workman, C. T., & Smets, B. F. (2012). Transcriptome dynamics of Pseudomonas putida KT2440 under water stress. Applied and Environmental Microbiology, 78(3): 676–683.
9. Liu, M.Q., Bjornlund, L., Rønn, R., Christensen, S., Ekelund, F. (2012) Disturbance promotes non-Indigenous bacterial Invasion in soil microcosms: Analysis of the roles of resource availability and community structure. PLoS ONE 7: e45306. doi:10.1371/journal.pone.0045306
10. Rønn, R., Vestergård, M. and Ekelund F. (2012) Interactions between bacteria, protozoa and nematodes in soil. Acta Protozoologica. 51: 223–235
11. Harder C. B., Lodge D. J., Petersen R.H., Hughes K.W., Blanco J.C., Frøslev, T.G., and Læssøe, T. (2012) Amyloidity is not diagnostic for species in the Mycena pearsoniana complex (Mycena sectio Calodontes). Mycological Progress 11, pp. 725-32.
12. Harder, C.B., Læssøe, T., Frøslev, T.G., Ekelund, F., Rosendahl, S. and Kjøller, R. (2013) A three-gene phylogeny of the Mycena pura complex reveals 11 phylogenetic species and shows ITS to be unreliable for species identification. Fungal Biology 117: 764-775
13. Ellegaard-Jensen, L., Aamand, J., Kragelund, B.B., Johnsen, A.H., and Rosendahl, S. (2013) Strains of the soil fungus Mortierella show different degradation potentials for the phenylurea herbicide diuron. Biodegradation 24: 765-774. DOI 10.1007/s10532-013-9624-7
14. Knudsen, B.E., Ellegaard-Jensen, L., Albers, C.N., Rosendahl, S., and Aamand, J. (2013) Fungal hyphae stimulate bacterial degradation of 2,6-dichlorobenzamide (BAM). Environmental Pollution 181: 122-127.
15. Sørensen, S.R., Juhler, R.K., Aamand, J. (2013) Degradation and mineralisation of diuron by Sphingomonas sp. SRS2 and its potential for remediating at a realistic mg L-1 diuron concentration. Pest Manag. Sci.69: 1239-1244.
16. Altenburger A., Bender, M., Ekelund, F., Elmholt, S. Jacobsen, C.S. (2014) Steam-treatment-based soil remediation promotes heat-tolerant, potentially pathogenic microbiota. Environmental Technology 35: 773-780
17. Ellegaard-Jensen, L., Knudsen, B.E., Johansen, A., Albers, C.N., Aamand, J., and Rosendahl, S. (2014) Fungal–bacterial consortia increase diuron degradation in water-unsaturated systems. Science of the Total Environment 466–467: 699-705.
18. Schultz-Jensen, N., Knudsen, B., Frkova, Z., Aamand, J., Johansen, T., Thykaer, J. and Sørensen, S. (2014) Large-scale bioreactor production of the herbicide-degrading Aminobacter sp. strain MSH1. Applied Microbiology and Biotechnology 98: 2335-2344.
19. Frkova, Z., Badawi, N., Johansen, A., Schultz-Jensen, N., Bester, K., Sørensen, S.R., and Karlson, U.G. (2014) Degradation of three benzonitrile herbicides by Aminobacter MSH1 versus soil microbial communities: pathways and kinetics. Pest Management Science 70: 1291-1298.
20. Harder C.B., Ekelund, F. and Karpov S.A. (2014) Ultrastructure and Phylogenetic Position of Regin rotiferus and Otto terricolus Genera et Species Novae (Bicosoecida, Heterokonta/Stramenopiles). Protist 165 144–160
21. Albers, C.N., Ellegaard-Jensen, L., Harder, C.B., Rosendahl, S., Knudsen, B.E., Ekelund, F., and Aamand, J. (2014) Groundwater chemistry determines the prokaryotic community structure of waterworks sand filters. Environmental Science & Technology 49: 839-846.
22. Krüger, U.S., Johnsen, A.R., Burmølle, M., Aamand, J., Sørensen, S.R. (2015) Potential for bioaugmentation of sand filters from waterworks using 4-chloro-2-methylphenoxyacetic acid degrading bacterial cultures. Pest Manag. Sci. 71: 257-265.
23. Frkova, Z., Johansen, A., Karlson, U.G. (2015) Mecoprop mineralization potential at oxygen-reduced conditions in subsoil with phenoxy acid contamination history. Soil Biology & Biochemistry (in press)
24. Ellegaard-Jensen, L., Albers, C.N., Aamand, J. (In prep) Protozoa within rapid sand filters graze on the inoculated degrader bacterium Aminobacter sp. MSH1.
25. Albers, C.N., Feld, L., Ellegaard-Jensen, L., Aamand, J. (Submitted) Degradation of trace-concentrations of the persistent groundwater pollutant 2,6-dichlorobenzamide (BAM) in inoculated waterworks rapid sand filters.
26. Harder, C.B., Rosendahl, S., Albers, C.N., Aamand, J., Ellegaard-Jensen, L., Knudsen, B.E., Ekelund, F. (In prep). Strong dispersal limitation of microeukaryotes over local distances.
27. Schultz-Jensen, N., Aamand, J., Sørensen, S.R. (Submitted) Bioaugmentation potential of free and formulated 2,6-dichlorobenzamide (BAM) degrading Aminobacter sp. MSH1 in soil, sand and water. J. Indust. Microbiol. Biotechnol.
28. Ekelund, F, Harder C. B., Knudsen, B. E. Aamand J. (Submitted)Aminobacter MSH1-mineralisation of BAM in sand-filters depends on biological diversity
29. Papadopoulou, A., Jørgensen-Hedegaard, M., Musovic, S., Dechesne, A., Albrechtsen, H-J., and Smets, B. (In prep.) Methanotrophs assisted transformation of bentazone and a bentazone-like compound.
30. Papadopoulou, A., Dechesne, A., Musovic, S., Albrechtsen, H-J., and Smets, B. (In prep.) Methanotrophic biofilm reactor simulating groundwater well conditions: developed approach for pesticide degradation testing
Presentations
1. Dechesne, A. Liquid distribution controls substrate diffusion and bacterial motility in the vadose zone. Invited. RAISEBIO Int. Symposium on Microbial Contaminant Degradation at Biogeochemical Interfaces. Leipzig (DE). March, 2010
2. Dechesne, A. and B.F. Smets. Surface roughness and limited hydration constrain motility-driven surface colonization by pseudomonads. 13th International Symposium on Microbial Ecology. Seattle (USA). August 22-27, 2010
3. Dechesne, A. Microbial motion in unsaturated soil: Experimental and modeling insights. Invited. DyCap Workshop on Microbiology and Reactive Transport in the Capillary Fringe. Heidelberg (DE). October 7-8, 2010.
4. Owsianiak, M., Dechesne A., Binning P.J., and B.F. Smets. Towards successful bioaugmentation with entrapped cells as a soil remediation technology: Effects of the water content and cell dispersal. GQ10: Groundwater Quality Management in a Rapidly Changing World. Zürich, (CH), June 13–18, 2010.
5. Owsianiak, M., Dechesne A., Binning P.J., and B.F. Smets. Modelling bioaugmentation in unsaturated porous media: The linuron herbicide example. GQ10: Groundwater Quality Management in a Rapidly Changing World. Zürich, (CH), June 13–18, 2010.
6. Knudsen, B.E., Ellegaard-Jensen, L., Albers, C., Rosendahl, S., and Aamand, J. Transport of BAM degrading bacteria facilitated by fungal hyphae increases BAM mineralization in sand. Symposium of the Danish Microbiological Society, Copenhagen. November 2011.
7. Ellegaard-Jensen, L., Knudsen, B.E., Aamand, J and Rosendahl, S. Fungal degradation of phenylurea herbicide diuron. Symposium of the Danish Microbiological Society, Copenhagen. November 2011.
8. Dechesne, A and Smets, B.F. Swarming motility is restricted to a narrow range of water matric potential. Poster Presented at the Congress of European Microbiologists (FEMS) - July, 2011, Geneva, Switzerland
9. Dechesne, A and Smets, B.F. Swarming motility is restricted to a narrow range of water matric potential. Poster Presented at the Symposium of the Danish Microbiological Society, Copenhagen. November 2011
10. Gozdereliler, E ; Dechesne, A ; Smets, B.F. ; Aamand, J. ; Sørensen, S. R. Isolation of herbercide-degrading bacteria from a groundwater aquifer using novel enrichment and isolation techniques. Presented at 8th International Symposium of Subsurface Microbiology (ISSM) - 8, 2011, Garmisch-Patenkirchen, Germany
11. Rosenbom, AE ; Johnsen, A.R. ; Aamand, J. ; Binning, PJ ; Dechesne, A; Smets, B.F. Cm-scale Heterogeneity in Degradation Potential - Impact on Leaching of MCPA through a Variably-Saturated Macroporous Clayey Till. Poster Presented at: AGU Fall Meeting, December 2011, San Fransisco, California, USA.
12. Gözdereliler, E., DeRoy, K., Amand, J., Boon, N., and Sørensen, S.R.. Molecular and physiological fingerprinting of herbicide-degrading microbial communities in response to different herbicide concentrations. Symposium of The Danish Microbiological Society. Copenhagen, Nov. 2011.
13. Schultz-Jensen, N., Knudsen, B.E., Aamand, J., and Sørensen, S.R.. Growth optimization of the pesticide degrader strain Aminobacter MSH1. Symposium of The Danish Microbiological Society. Copenhagen, Nov. 2011.
14. Albers, C.N., Fjernelse af grundvandsforurening med mikroorganismer - fremtidens løsning på fortidens synder?, Foredrag præsenteret på ATV Jord og Grundvand, Vintermøde 6.-7. marts 2012
15. Dechesne, A., Badawi N., Sørensen S.R., and B.F. Smets. Isolating bacteria synergistically degrading the pesticide linuron from soil without prior enrichment. Invited Poster. EU-US Environmental Biotechnology Working Group Workshop, St. Louis, (USA), November 4-7, 2012.
16. Ellegaard-Jensen, L., Aamand, J., Kragelund, B.B., Johnsen, A.H., & Rosendahl, S.. Degradation of the herbicide diuron by Mortierella. Presented at The International Symposium on Microbial Ecology – ISME14, Copenhagen 19.- 24.08.2012.
17. Knudsen, B.E., Ellegaard-Jensen, L., Albers, C., Rosendahl, S., & Aamand, J.. Transport of BAM degrading bacteria facilitated by fungal hyphae increases BAM mineralization in sand. Presented at The International Symposium on Microbial Ecology – ISME14, Copenhagen 19.- 24.08.2012.
18. Ellegaard-Jensen, L., Knudsen, B.E., Albers, C.N., Aamand, J., & Rosendahl, S.. Three-member consortium overcomes dry patches and increases diuron degradation. Presented at Copenhagen Microbiology Center – CMC Symposium, Copenhagen 5.10.2012. Poster and Flash Presentation
19. Ellegaard-Jensen, L., Knudsen, B.E., Johansen, A., Albers, C.N., Aamand, J., & Rosendahl, S.. Three-member consortium overcomes dry patches and increases diuron degradation. Presented at Symposium of the Danish Microbiological Society. Copenhagen, November 2012
20. Schultz-Jensen N., Knudsen E. B., Frková Z., Thykær J., Johansen T., Aamand J., Sørensen S. R.. Medium Optimization and Production of the Wild Type Pesticide Degrader Strain Aminobacter MSH1 in a Bioreactor. (2012) ISME, Copenhagen.
21. Schultz-Jensen N., Knudsen E.B., Albers N. C., Frková Z., Sørensen S.R., Aamand J.. Studies on the Enhancement of the Mineralization Rate of Aminobacter MSH1 of Dichlorobenzamide (BAM) by Addition of Specific Nutrients. 2012 Symposium of The Danish Microbiological Society, Copenhagen, Denmark.
22. Schultz-Jensen N., Knudsen E. B., Aamand J., Sørensen S. R.. Growth Optimization of the Pesticide Degrader Strain Aminobacter MSH1. 2012 Symposium of The Danish Microbiological Society, Copenhagen, Denmark.
23. Larsen L., Schultz-Jensen N., Burmølle M., Sørensen S.R., Aamand J. Growth Optimization of the Herbicide Degrading Sphingomonas Strain PM2 and Immobilization of the Bacteria as a Biofilm on Different matrix´s. 2012 Symposium of The Danish Microbiological Society, Copenhagen, Denmark.
24. Sharp E.R., Schultz-Jensen N., Aamand J., Pedersen H.C., Sørensen S.R.. Growth Characterization and Immobilization Studies of the MCPA Pesticide Degrader Strain Sphingomonas sp. Erg5. 2012 Symposium of The Danish Microbiological Society, Copenhagen, Denmark.
25. Frková Z., Badawi N., Johansen A., Schultz-Jensen N., Bester K., Sørensen S., Gosewinkel U.B. Degradation of three benzonitrile herbicides - ioxynil, bromoxynil and dichlobenil - in pure bacterial cultures versus agricultural soil. Poster at SETAC (Society of Environmental Toxicology and Chemistry), 2013, Glasgow, Scotland.
26. Frková Z., Johansen A., Gosewinkel U.B. Mecoprop mineralization in subsoil at denitrifying conditions. Presented at ICEPR (International Conference of Environmental Pollution and Remadiation), 2013, Toronto, Canada.
27. Frková Z., Johansen A., Gosewinkel U.B. Mecoprop mineralization in subsoil at denitrifying conditions. Poster at FEMS (Federation of European Microbiological Society), 2013, Leibzig, Germany.
28. Harder, C.B. The artificial lake bottoms on water treatment plants - analysed by 454/pyrosequencing. Abstract/Talk at the spring conference 2013 in British Society for Protist Biology.
29. Dechesne, A., Smets, B.F.. Barriers to bacterial motility on unsaturated surfaces. KeyNote Presentation at SME 2013: 5th Swiss Microbial Ecology Meeting, 4.-6. February 2013, Murten, Switzerland.
30. Ellegaard-Jensen, L., Knudsen, B.E., Johansen, A., Albers, C.N., Aamand, J., and Rosendahl, S. Fungal–bacterial consortia increase degradation of the phenylurea herbicide diuron in water-unsaturated systems. Poster presented at The 6th International Conference on Pesticide Behaviour in Soils, Water and Air. 2.-4. September 2013. York, UK.
31. Albers, C.N., Sørensen, S.R., Jacobsen, O.S., and Aamand, J. Rapid degradation of pesticides at low concentrations – the possibility of using biodegradation to purify polluted groundwater during sand filtration. Poster presented at The 6th International Conference on Pesticide Behaviour in Soils, Water and Air. 2.-4. September 2013. York, UK.
32. Ellegaard-Jensen, L., Albers, C.N., and Aamand, J. 2013. Protozoan grazing affects the survival of degrader bacteria introduced into waterworks sand filter material. Presented at Symposium of the Danish Microbiological Society. 18. November 2013. Copenhagen, Denmark.
33. Aamand, J., Ellegaard‐Jensen, L., Feld, L., and Albers, C.N. 2013. Introduction of specific pesticide-degrading bacteria into waterworks sandfilters. Presented at the 2nd European Symposium on Water Technology & Management. 20.-21. November 2013. Leuven, Belgium.
34. Ellegaard-Jensen, L., Albers, C.N., Harder, C.B., Rosendahl, S., Knudsen, B.E., Ekelund, F., and Aamand, J. 2014. The prokaryotic community structures of waterworks sand filters are shaped by groundwater chemistry. Presented at The International Symposium on Microbial Ecology – ISME15. 24.-29. August 2014. Seoul, South Korea.
35. Papadopoulou A., Jørgensen-Hedegaard M., Dechesne A., Albrechtsen H-J., and Smets B., 2014. Poster at XVI International Biodeterioration and Biodegradation Symposium (IBBS), 3-5. September 2014, Lodz, Poland.
36. Papadopoulou A., Jørgensen-Hedegaard M., Dechesne A., Albrechtsen H-J., and Smets B., 2014. Poster at Symposium of the Danish Mocrobiological Society (DMS), 10. November 2014, Copenhagen, Denmark.
37. Aamand, J., Ellegaard‐Jensen, L., Feld, L., and Albers, C.N. 2014. Introduction of specific pesticide-degrading bacteria into waterworks sandfilters – a technology for bioremediation of pesticide polluted drinking water. Presented at Energy and Environment for the Future conference - Innovation Fund Denmark. 24.-25. November 2014. Copenhagen, Denmark.
38. Ellegaard-Jensen, L., Knudsen, B.E., Johansen, A., Albers, C.N., Aamand, J., and Rosendahl, S. 2014. Fungal–bacterial consortia increase degradation of the phenylurea herbicide diuron in water-unsaturated systems. Presented at Energy and Environment for the Future conference - Innovation Fund Denmark. 24.-25. November 2014. Copenhagen, Denmark.
39. Ellegaard-Jensen, L., Albers, C.N., Harder, C.B., Rosendahl, S., Knudsen, B.E., Ekelund, F., and Aamand, J. 2014. The prokaryotic community structures of waterworks sand filters are shaped by groundwater chemistry. Presented at Energy and Environment for the Future conference - Innovation Fund Denmark. 24.-25. November 2014. Copenhagen, Denmark.
40. Albers, C.N. 2015. Mikrobiel nedbrydning af pesticider i vandværker og på afværgeanlæg – hvad viser hidtidig forskning, og hvad er fremtidsperspektiverne. Presented at Nedbrydning af miljøfremmede stoffer i umættet og mættet zone, ATV Jord og Grundvand.28. January 2015. Gentofte, Denmark.
41. Papadopoulou A., Jørgensen-Hedegaard M., Musovic S., Dechesne A., Albrechtsen H-J., and Smets B., 2015. Methanotrophs assisted bentazone’s transformation product degradation. Presented at the 9th annual meeting of the Danish Water Forum (DWF15) – Danish Groundwater – based Sustainable Drinking Water Supply. 29. January 2015, Copenhagen, Denmark.
42. Ellegaard-Jensen, L., Albers, C.N., Harder, C.B., Rosendahl, S., Knudsen, B.E., Ekelund, F., and Aamand, J. 2015. The prokaryotic community structures of waterworks sand filters are shaped by groundwater chemistry. Presented at the 9th annual meeting of the Danish Water Forum (DWF15) - Danish Groundwater-based Sustainable Drinking Water Supply. 29. January 2015. Copenhagen, Denmark.
43. Aamand, J., Ellegaard‐Jensen, L., Feld, L., and Albers, C.N. 2015. Introduction of specific pesticide degrading bacteria into waterworks sandfilters – a technology for bioremediation of pesticide polluted drinking water. Presented at the 9th annual meeting of the Danish Water Forum (DWF15) - Danish Groundwater-based Sustainable Drinking Water Supply. 29. January 2015. Copenhagen, Denmark.
Others
1. Ellegaard-Jensen, L. 2012. Fungal degradation of pesticides - construction of microbial consortia for bioremediation. PhD thesis, University of Copenhagen.
2. Knudsen, B. E. 2012. Bacterial degradation of pesticides - construction of microbial consortia for bioremediation. PhD thesis, University of Copenhagen.
3. Harder, C. B. 2013. Pyrosequencing and genetic diversity of microeukaryotes. PhD thesis, University of Copenhagen.
4. Frková, Zuzana. 2014. Bio-degradation of herbicides by axenic bacterial cultures and soil microbial cummunities. PhD thesis, Aarhus University.
|
